samples/no-modules: (1/46)
Compiling.. [double] ok 01:07
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:00
Validating results.. ok
Time used: 01:08 = 01:07 + 00:00
samples/most-modules: (2/46)
Compiling.. ok 03:28
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:12
Running.. [KEEP_RELOADING] ok 01:23
Validating results.. ok
Time used: 05:03 = 03:28 + 01:35
samples/backwards-compatible: (3/46)
Compiling.. ok 02:03
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:01
Validating results.. ok
Time used: 02:05 = 02:03 + 00:01
samples/2d-tests/selfgravitating-shearwave: (4/46)
Compiling.. ok 01:56
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:01
Running.. [KEEP_RELOADING] ok 00:07
Validating results.. ok
Time used: 02:05 = 01:56 + 00:08
samples/2d-tests/chemistry_GrayScott: (5/46)
Compiling.. ok 01:34
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:19
Validating results.. ok
Time used: 01:53 = 01:34 + 00:19
samples/0d-tests/heating_ionize: (6/46)
Compiling.. [double] ok 01:32
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:01
Running.. [KEEP_RELOADING] ok 04:27
Validating results.. ok
Time used: 06:01 = 01:32 + 04:29
samples/dust-vortex: (7/46)
Compiling.. ok 02:05
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 01:48
Validating results.. ok
Time used: 03:54 = 02:05 + 01:48
samples/0d-tests/heating_noionize: (8/46)
Compiling.. ok 01:29
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:00
Validating results.. ok
Time used: 01:30 = 01:29 + 00:00
samples/1d-tests/H2_flamespeed: (9/46)
Compiling.. ok 02:07
Starting.. not ok: 00:00
Found config file
hostname = norlx51
Non-MPI run
1 CPU
lparticles = 0
lparticles_nbody = 0
Subcommand: start
Thu Sep 2 12:16:17 2010
Running
env G95_MEM_INIT=NAN G95_FPU_EXCEPTIONS=Yes G95_MEM_MAXALLOC=Yes G95_FPU_ZERODIV=Yes G95_FPU_OVERFLOW=Yes G95_SHOW_LOCUS=Yes G95_FPU_INVALID=Yes /usr/bin/time -p src/start.x
STOP 1
Floating point exceptions recorded:
Precision loss (inexact)
STOPPED: build_stoich_matrix:Did not find specie!
SVN: start.f90 v. 14729 (2010-08-07 08:53:36) dhruba.mitra
SVN: start.in,v v. 1.3 (2009-03-17 10:59:27) nbabkovs
get_snapdir: dir=
Creating data/variables.pro
SVN: io_dist.f90 v. 13749 (2010-04-25 20:34:51) sven.bingert
SVN: noinitial_conditio v. 14802 (2010-08-09 22:15:10) dhruba.mitra
SVN: eos_chemistry.f90 v. 14665 (2010-08-02 15:14:41) sven.bingert
SVN: noshock.f90 v. 13864 (2010-05-11 14:25:58) sven.bingert
SVN: viscosity.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: hydro.f90 v. 14968 (2010-09-01 17:37:47) AxelBrandenburg
PC:mvar, nvar 18 3
SVN: nogravity.f90 v. 14479 (2010-07-29 10:36:22) anders
SVN: density.f90 v. 14970 (2010-09-02 06:22:53) anders
SVN: noforcing.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: temperature_ioniza v. 14492 (2010-07-29 12:01:09) anders
SVN: nomagnetic.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: nolorenz_gauge.f90 v. 13864 (2010-05-11 14:25:58) sven.bingert
SVN: nopolymer.f90 v. 14733 (2010-08-07 09:35:15) anders
SVN: noradiation.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: nopscalar.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: nochiral.f90 v. 14492 (2010-07-29 12:01:09) anders
Write pc_constants.pro in chemistry.f90
SVN: chemistry.f90 v. 14789 (2010-08-09 08:52:54) NBabkovskaia
SVN: nodustvelocity.f90 v. 14037 (2010-06-03 05:26:21) ajohan
SVN: nodustdensity.f90 v. 14035 (2010-06-02 22:32:37) dhruba.mitra
SVN: noneutralvelocity. v. 14479 (2010-07-29 10:36:22) anders
SVN: noneutraldensity.f v. 14492 (2010-07-29 12:01:09) anders
SVN: nocosmicray.f90 v. 14566 (2010-07-30 19:31:27) AxelBrandenburg
SVN: nocosmicrayflux.f9 v. 14492 (2010-07-29 12:01:09) anders
SVN: nointerstellar.f90 v. 14806 (2010-08-10 00:45:23) fred.gent.ncl
SVN: noshear.f90 v. 14476 (2010-07-29 09:27:00) anders
SVN: nospecial.f90 v. 14697 (2010-08-04 14:30:36) NBabkovskaia
Reading print formats from print.in
nxgrid, nygrid, nzgrid= 128 1 1
units_general: unit_velocity= 1.
units_general: unit_density= 1.
units_general: unit_length= 1.
units_general: unit_magnetic= 3.5449077018110318
initialize_eos: chem.imp is found! Now cp, cv, gamma, mu are pencils ONLY!
(x,y,z)(point)= -0.001968503937007874 0.05 0.05
(x,y,z)(point2)= -0.13582677165354332 0.05 0.05
diffusion: nothing
select_eos_variable: Using lnrho and lnTT
tran.dat file with transport data is found.
the following species are found in tran.dat: beginning of the list:
AR ind_glob= 14 ind_chem= 9
CO ind_glob= 17 ind_chem= 12
CO2 ind_glob= 18 ind_chem= 13
H ind_glob= 9 ind_chem= 4
H2 ind_glob= 6 ind_chem= 1
H2O ind_glob= 8 ind_chem= 3
H2O2 ind_glob= 13 ind_chem= 8
HE ind_glob= 16 ind_chem= 11
HO2 ind_glob= 12 ind_chem= 7
N2 ind_glob= 15 ind_chem= 10
O ind_glob= 10 ind_chem= 5
O2 ind_glob= 7 ind_chem= 2
OH ind_glob= 11 ind_chem= 6
the following species are found in tran.dat: end of the list:
Number of reactions= 25
Number of species= 13
ChemInpLine(StartSpecie:StopInd)=
ind_glob,ind_chem= 0 -2147483648
Command exited with non-zero status 1
real 0.11
user 0.02
sys 0.00
env G95_MEM_INIT=NAN G95_FPU_EXCEPTIONS=Yes G95_MEM_MAXALLOC=Yes G95_FPU_ZERODIV=Yes G95_FPU_OVERFLOW=Yes G95_SHOW_LOCUS=Yes G95_FPU_INVALID=Yes /usr/bin/time -p src/start.x failed: No such file or directory
Aborting
Time used: undef = 02:07 + undef
samples/chiral-diffusion: (10/46)
Compiling.. ok 01:19
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:00
Validating results.. ok
Time used: 01:19 = 01:19 + 00:00
samples/cosmicray: (11/46)
Compiling.. ok 01:52
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:01
Validating results.. ok
Time used: 01:53 = 01:52 + 00:01
samples/1d-tests/sod_10: (12/46)
Compiling.. ok 01:44
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:08
Validating results.. ok
Time used: 01:53 = 01:44 + 00:08
samples/1d-tests/ambipolar_diffusion: (13/46)
Compiling.. ok 01:50
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:15
Validating results.. ok
Time used: 02:06 = 01:50 + 00:15
samples/helical-MHDturb: (14/46)
Compiling.. ok 02:36
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 03:44
Validating results.. ok
Time used: 06:21 = 02:36 + 03:44
samples/testfield_z: (15/46)
Compiling.. ok 01:55
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 02:10
Validating results.. ok
Time used: 04:06 = 01:55 + 02:11
samples/random_uu_particles: (16/46)
Compiling.. ok 02:09
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:01
Running.. [KEEP_RELOADING] ok 05:42
Validating results.. ok
Time used: 07:52 = 02:09 + 05:43
samples/1d-tests/solar-atmosphere-temperature: (17/46)
Compiling.. [double] ok 01:32
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] not ok: 00:00
Found config file
hostname = norlx51
Non-MPI run
1 CPU
lparticles = 0
lparticles_nbody = 0
Subcommand: run
Thu Sep 2 12:43:24 2010
Running
env G95_MEM_INIT=NAN G95_FPU_EXCEPTIONS=Yes G95_MEM_MAXALLOC=Yes G95_FPU_ZERODIV=Yes G95_FPU_OVERFLOW=Yes G95_SHOW_LOCUS=Yes G95_FPU_INVALID=Yes /usr/bin/time -p src/run.x
Floating point exception: Division by zero
At line 1317 of file radiation_ray.f90
Traceback: (Innermost first)
Called from line 574 of file equ.f90
Called from line 106 of file pencil_check.f90
Called from line 354 of file run.f90
SVN: run.f90 v. 14921 (2010-08-24 16:03:16) boris.dintrans
SVN: run.in v. 9840 (2008-09-05 07:29:37) ajohan
ldebug,ip= F 14
get_snapdir: dir=
Creating data/variables.pro
SVN: io_dist.f90 v. 13749 (2010-04-25 20:34:51) sven.bingert
SVN: noinitial_conditio v. 14802 (2010-08-09 22:15:10) dhruba.mitra
SVN: eos_temperature_io v. 14567 (2010-07-30 19:32:29) wladimir.lyra
SVN: noshock.f90 v. 13864 (2010-05-11 14:25:58) sven.bingert
SVN: viscosity.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: hydro.f90 v. 14968 (2010-09-01 17:37:47) AxelBrandenburg
PC:mvar, nvar 5 3
SVN: gravity_simple.f90 v. 14479 (2010-07-29 10:36:22) anders
SVN: density.f90 v. 14970 (2010-09-02 06:22:53) anders
SVN: noforcing.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: temperature_ioniza v. 14492 (2010-07-29 12:01:09) anders
SVN: nomagnetic.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: nolorenz_gauge.f90 v. 13864 (2010-05-11 14:25:58) sven.bingert
SVN: nopolymer.f90 v. 14733 (2010-08-07 09:35:15) anders
SVN: radiation_ray.f90 v. 14961 (2010-08-31 09:31:50) AxelBrandenburg
SVN: nopscalar.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: nochiral.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: nodustvelocity.f90 v. 14037 (2010-06-03 05:26:21) ajohan
SVN: nodustdensity.f90 v. 14035 (2010-06-02 22:32:37) dhruba.mitra
SVN: noneutralvelocity. v. 14479 (2010-07-29 10:36:22) anders
SVN: noneutraldensity.f v. 14492 (2010-07-29 12:01:09) anders
SVN: nocosmicray.f90 v. 14566 (2010-07-30 19:31:27) AxelBrandenburg
SVN: nocosmicrayflux.f9 v. 14492 (2010-07-29 12:01:09) anders
SVN: nointerstellar.f90 v. 14806 (2010-08-10 00:45:23) fred.gent.ncl
SVN: noshear.f90 v. 14476 (2010-07-29 09:27:00) anders
SVN: nospecial.f90 v. 14697 (2010-08-04 14:30:36) NBabkovskaia
Reading print formats from print.in.double
This is a 1-D run
nxgrid, nygrid, nzgrid= 1 1 512
Lx, Ly, Lz= 6. 6. 3.20542
Vbox= 115.39512
read_runpars: slice_position = p
read_runpars: ix,iy,iz,iz2 (video files) = -1 -1 -1 -1
units_general: unit_velocity= 1000000.
units_general: unit_density= 9.999999999999998E-8
units_general: unit_length= 1.E+8
units_general: unit_magnetic= 3.5449077018110318
(x,y,z)(point)= 0. 0. -1.0123864187866924
(x,y,z)(point2)= 0. 0. -1.82785530332681
initialize_eos: ENTER
initialize_gravity: no x-gravity
initialize_gravity: no y-gravity
initialize_gravity: constant gravz= -2.75
diffusion: nothing
WARNING!
inconsistency between the density constants from eos
(rho0 or lnrho0) and the ones from the density module
(rho_const or lnrho_const). It may damage your
simulation if you are using them in different places.
WARNING: initialize_density:
viscous force: nu*(del2u+graddivu/3+2S.glnrho)
choose_pencils: finding out which pencils are needed for the pencil case
write_pencil_info: pencil information written to the file pencils.list
pencil_consistency_check: checking pencil case
Command exited with non-zero status 95
real 0.09
user 0.05
sys 0.01
env G95_MEM_INIT=NAN G95_FPU_EXCEPTIONS=Yes G95_MEM_MAXALLOC=Yes G95_FPU_ZERODIV=Yes G95_FPU_OVERFLOW=Yes G95_SHOW_LOCUS=Yes G95_FPU_INVALID=Yes /usr/bin/time -p src/run.x failed: No such file or directory
Aborting
samples/kin-dynamo: (18/46)
Compiling.. ok 01:41
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:56
Validating results.. ok
Time used: 02:38 = 01:41 + 00:57
samples/meissner: (19/46)
Compiling.. [double] ok 02:18
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 01:40
Validating results.. ok
Time used: 03:59 = 02:18 + 01:40
samples/conv-slab-noequi: (20/46)
Compiling.. ok 01:55
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 01:51
Validating results.. ok
Time used: 03:46 = 01:55 + 01:51
samples/conv-slab: (21/46)
Compiling.. [double] ok 01:57
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:03
Running.. [KEEP_RELOADING] ok 00:53
Validating results.. ok
Time used: 02:55 = 01:57 + 00:57
samples/2d-tests/globaldisc: (22/46)
Compiling.. ok 02:00
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:03
Running.. [KEEP_RELOADING] ok 02:36
Validating results.. ok
Time used: 04:40 = 02:00 + 02:39
samples/2d-tests/cylindrical_gdisk: (23/46)
Compiling.. ok 01:43
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:01
Validating results.. ok
Time used: 01:44 = 01:43 + 00:01
samples/0d-tests/solar_system: (24/46)
Compiling.. ok 01:34
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:02
Running.. [KEEP_RELOADING] ok 00:04
Validating results.. ok
Time used: 01:40 = 01:34 + 00:06
samples/mdwarf: (25/46)
Compiling.. ok 02:15
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 03:35
Validating results.. ok
Time used: 05:52 = 02:15 + 03:36
samples/sedimentation: (26/46)
Compiling.. ok 02:25
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:01
Running.. [KEEP_RELOADING] ok 01:57
Validating results.. ok
Time used: 04:24 = 02:25 + 01:58
samples/MRI-turbulence_hyper: (27/46)
Compiling.. [double] ok 02:18
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:02
Running.. [KEEP_RELOADING] ok 01:24
Validating results.. ok
Time used: 03:45 = 02:18 + 01:27
samples/dust_turb_globaldisk: (28/46)
Compiling.. ok 02:42
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:02
Running.. [KEEP_RELOADING] ok 03:46
Validating results.. ok
Time used: 06:31 = 02:42 + 03:49
samples/geodynamo: (29/46)
Compiling.. ok 02:27
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:02
Running.. [KEEP_RELOADING] ok 06:36
Validating results.. ok
Time used: 09:06 = 02:27 + 06:38
samples/2d-tests/cylinder_deposition: (30/46)
Compiling.. ok 02:21
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:01
Running.. [KEEP_RELOADING] ok 00:53
Validating results.. ok
Time used: 03:16 = 02:21 + 00:55
samples/2d-tests/selfgravdisk-deadzone-dust: (31/46)
Compiling.. ok 02:22
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:02
Running.. [KEEP_RELOADING] ok 00:24
Validating results.. ok
Time used: 02:49 = 02:22 + 00:27
samples/2d-tests/spherical_viscous_ring: (32/46)
Compiling.. ok 01:48
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:18
Validating results.. ok
Time used: 02:07 = 01:48 + 00:18
samples/0d-tests/coagulation-fragmentation: (33/46)
Compiling.. ok 01:29
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:00
Validating results.. ok
Time used: 01:30 = 01:29 + 00:00
samples/0d-tests/heating_ionize_planck: (34/46)
Compiling.. [double] ok 01:36
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:00
Validating results.. ok
Time used: 01:36 = 01:36 + 00:00
samples/1d-tests/jeans-drag-dustpar-x: (35/46)
Compiling.. ok 01:48
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:01
Validating results.. ok
Time used: 01:50 = 01:48 + 00:01
samples/1d-tests/jeans-x: (36/46)
Compiling.. ok 01:56
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:00
Validating results.. ok
Time used: 01:57 = 01:56 + 00:00
samples/1d-tests/sod_10s: (37/46)
Compiling.. ok 01:44
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:10
Validating results.. ok
Time used: 01:55 = 01:44 + 00:10
samples/1d-tests/toomre-x: (38/46)
Compiling.. ok 01:56
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:00
Validating results.. ok
Time used: 01:57 = 01:56 + 00:00
samples/2d-tests/bubble: (39/46)
Compiling.. ok 01:59
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:03
Validating results.. ok
Time used: 02:03 = 01:59 + 00:03
samples/2d-tests/conv-slab-MLT: (40/46)
Compiling.. ok 01:59
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:00
Running.. [KEEP_RELOADING] ok 00:04
Validating results.. ok
Time used: 02:03 = 01:59 + 00:04
samples/interstellar: (41/46)
Compiling.. [double] ok 02:23
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. not ok: 00:00
Found config file
hostname = norlx51
Non-MPI run
1 CPU
lparticles = 0
lparticles_nbody = 0
Subcommand: start
Thu Sep 2 14:00:02 2010
Running
env G95_MEM_INIT=NAN G95_FPU_EXCEPTIONS=Yes G95_MEM_MAXALLOC=Yes G95_FPU_ZERODIV=Yes G95_FPU_OVERFLOW=Yes G95_SHOW_LOCUS=Yes G95_FPU_INVALID=Yes /usr/bin/time -p src/start.x
Floating point exception: Invalid operation
At line 1309 of file interstellar.f90
Traceback: (Innermost first)
Called from line 804 of file interstellar.f90
Called from line 388 of file register.f90
Called from line 320 of file start.f90
SVN: start.f90 v. 14729 (2010-08-07 08:53:36) dhruba.mitra
SVN: start.in v. 14865 (2010-08-15 06:33:50) AxelBrandenburg
get_snapdir: dir=
Creating data/variables.pro
SVN: io_dist.f90 v. 13749 (2010-04-25 20:34:51) sven.bingert
SVN: noinitial_conditio v. 14802 (2010-08-09 22:15:10) dhruba.mitra
SVN: eos_idealgas.f90 v. 14825 (2010-08-11 08:54:07) sven.bingert
SVN: viscosity.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: hydro.f90 v. 14968 (2010-09-01 17:37:47) AxelBrandenburg
PC:mvar, nvar 8 3
SVN: gravity_simple.f90 v. 14479 (2010-07-29 10:36:22) anders
SVN: density.f90 v. 14970 (2010-09-02 06:22:53) anders
SVN: noforcing.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: entropy.f90 v. 14965 (2010-09-01 10:33:23) fred.gent.ncl
SVN: magnetic.f90 v. 14747 (2010-08-07 15:05:09) anders
SVN: nolorenz_gauge.f90 v. 13864 (2010-05-11 14:25:58) sven.bingert
SVN: nopolymer.f90 v. 14733 (2010-08-07 09:35:15) anders
SVN: noradiation.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: nopscalar.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: nochiral.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: nodustvelocity.f90 v. 14037 (2010-06-03 05:26:21) ajohan
SVN: nodustdensity.f90 v. 14035 (2010-06-02 22:32:37) dhruba.mitra
SVN: noneutralvelocity. v. 14479 (2010-07-29 10:36:22) anders
SVN: noneutraldensity.f v. 14492 (2010-07-29 12:01:09) anders
SVN: nocosmicray.f90 v. 14566 (2010-07-30 19:31:27) AxelBrandenburg
SVN: nocosmicrayflux.f9 v. 14492 (2010-07-29 12:01:09) anders
SVN: interstellar.f90 v. 14972 (2010-09-02 08:15:54) fred.gent.ncl
SVN: shear.f90 v. 14931 (2010-08-26 12:22:23) mreinhardt
SVN: nospecial.f90 v. 14697 (2010-08-04 14:30:36) NBabkovskaia
Reading print formats from print.in.double
nxgrid, nygrid, nzgrid= 32 32 64
units_general: unit_velocity= 100000.
units_general: unit_density= 1.E-24
units_general: unit_length= 3.16E+21
units_general: unit_magnetic= 3.54491E-7
initialize_eos: unit_temperature= 10000.
initialize_eos: cp, lnTT0, cs0, pp0= 335.2609955122174 -5.409444211464232 1. 0.37199999999999983
(x,y,z)(point)= -0.001953125 -0.001953125 -0.001984126984126984
(x,y,z)(point2)= -0.041015625 -0.041015625 -0.0734126984126984
initialize_gravity: no x-gravity
initialize_gravity: no y-gravity
diffusion: nothing
select_eos_variable: Using lnrho and ss
initialize_entropy: nheatc_max,iheatcond= 4 nothing nothing nothing nothing
heat conduction: nothing
resistivity: constant eta
initialize_interstellar: t_next_SNI 0.
initialize_interstellar: unit_Lambda 3.1645569620253165E+17
initialize_interstellar: SS-Slyzr cooling fct
initialize_interstellar: solar_mass (code) = 6.303380665626857E-8
initialize_interstellar: ampl_SN, kampl_SN = 3.1691204955388925 0.
Command exited with non-zero status 95
real 0.06
user 0.03
sys 0.01
env G95_MEM_INIT=NAN G95_FPU_EXCEPTIONS=Yes G95_MEM_MAXALLOC=Yes G95_FPU_ZERODIV=Yes G95_FPU_OVERFLOW=Yes G95_SHOW_LOCUS=Yes G95_FPU_INVALID=Yes /usr/bin/time -p src/start.x failed: No such file or directory
Aborting
Time used: undef = 02:23 + undef
samples/interlocked-fluxrings: (42/46)
Compiling.. [double] ok 02:11
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:02
Running.. [KEEP_RELOADING] ok 02:14
Validating results.. ok
Time used: 04:28 = 02:11 + 02:16
samples/conv-slab-flat: (43/46)
Compiling.. ok 02:03
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:01
Running.. [KEEP_RELOADING] ok 02:04
Validating results.. ok
Time used: 04:09 = 02:03 + 02:05
samples/corona: (44/46)
Compiling.. ok 02:35
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:01
Running.. [KEEP_RELOADING] ok 06:57
Validating results.. ok
Time used: 09:35 = 02:35 + 06:59
samples/testfield: (45/46)
Compiling.. ok 01:28
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:02
Running.. [KEEP_RELOADING] ok 00:10
Validating results.. ok
Time used: 01:41 = 01:28 + 00:12
samples/testfield_nonlin_z: (46/46)
Compiling.. ok 02:07
No data directory; generating data -> /tmp/pencil-tmp-brandenb-24939
Starting.. ok 00:02
Running.. [KEEP_RELOADING] not ok: 00:24
Found config file
hostname = norlx51
MPI run
4 CPUs
4 nodes, 1 CPU per node
lparticles = 0
lparticles_nbody = 0
Subcommand: run
Thu Sep 2 14:22:08 2010
Running under MPI
Running
env G95_MEM_INIT=NAN G95_FPU_EXCEPTIONS=Yes G95_MEM_MAXALLOC=Yes G95_FPU_ZERODIV=Yes G95_FPU_OVERFLOW=Yes G95_SHOW_LOCUS=Yes G95_FPU_INVALID=Yes /usr/bin/time -p mpiexec -mca btl ^openib -n 4 src/run.x
SVN: run.f90 v. 14921 (2010-08-24 16:03:16) boris.dintrans
SVN: run.in,v v. 1.1 (2010-01-01 18:05:23) brandenb
ldebug,ip= F 14
WARNING: for nprocx > 1 Fourier transform is not OK
get_snapdir: dir=
Creating data/variables.pro
SVN: io_dist.f90 v. 13749 (2010-04-25 20:34:51) sven.bingert
SVN: noinitial_conditio v. 14802 (2010-08-09 22:15:10) dhruba.mitra
SVN: noeos.f90 v. 14665 (2010-08-02 15:14:41) sven.bingert
SVN: noshock.f90 v. 13864 (2010-05-11 14:25:58) sven.bingert
SVN: viscosity.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: hydro.f90 v. 14968 (2010-09-01 17:37:47) AxelBrandenburg
PC:mvar, nvar 36 3
SVN: nogravity.f90 v. 14479 (2010-07-29 10:36:22) anders
SVN: nodensity.f90 v. 14218 (2010-07-04 16:01:57) mppiyali
SVN: forcing.f90 v. 14895 (2010-08-20 07:20:57) AxelBrandenburg
SVN: noentropy.f90 v. 14968 (2010-09-01 17:37:47) AxelBrandenburg
SVN: magnetic.f90 v. 14747 (2010-08-07 15:05:09) anders
SVN: nolorenz_gauge.f90 v. 13864 (2010-05-11 14:25:58) sven.bingert
SVN: nopolymer.f90 v. 14733 (2010-08-07 09:35:15) anders
SVN: testfield_nonlin_z v. 14785 (2010-08-08 21:32:38) AxelBrandenburg
SVN: noradiation.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: nopscalar.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: nochiral.f90 v. 14492 (2010-07-29 12:01:09) anders
SVN: nodustvelocity.f90 v. 14037 (2010-06-03 05:26:21) ajohan
SVN: nodustdensity.f90 v. 14035 (2010-06-02 22:32:37) dhruba.mitra
SVN: noneutralvelocity. v. 14479 (2010-07-29 10:36:22) anders
SVN: noneutraldensity.f v. 14492 (2010-07-29 12:01:09) anders
SVN: nocosmicray.f90 v. 14566 (2010-07-30 19:31:27) AxelBrandenburg
SVN: nocosmicrayflux.f9 v. 14492 (2010-07-29 12:01:09) anders
SVN: nointerstellar.f90 v. 14806 (2010-08-10 00:45:23) fred.gent.ncl
SVN: noshear.f90 v. 14476 (2010-07-29 09:27:00) anders
SVN: nospecial.f90 v. 14697 (2010-08-04 14:30:36) NBabkovskaia
Reading print formats from print.in
allocate_vnames: allocated memory for cnamev with nnamev = 1
allocate_xyaverages: allocated memory for fnamez with nnamez = 6
allocate_zaverages : allocated memory for fnamexy with nnamexy = 9
This is a 3-D run
nxgrid, nygrid, nzgrid= 32 32 32
Lx, Ly, Lz= 6.283185307179586 6.283185307179586 6.283185307179586
Vbox= 248.05021344239853
input_persistent_forcing: 0. 0. 0. -10.
input_persistent_forcing: 0. 0. 0. -10.
input_persistent_forcing: 0. 0. 0. -10.
input_persistent_magnetic: 0.
input_persistent_forcing: 0. 0. 0. -10.
input_persistent_magnetic: 0.
read_runpars: slice_position = p
read_runpars: ix,iy,iz,iz2 (video files) = -1 -1 -1 -1
units_general: unit_velocity= 1.
units_general: unit_density= 1.
units_general: unit_length= 1.
units_general: unit_magnetic= 3.5449077018110318
(x,y,z)(point)= -1.6689710972195777 -1.6689710972195777 -0.09817477042468103
(x,y,z)(point2)= -2.84706834231575 -2.84706834231575 -2.061670178918302
forcing_cont: Roberts Flow
resistivity: constant eta
initialize_magnetic: iuxb = 37
initialize_magnetic: ijxb = 52
viscous force: nu*del2v
choose_pencils: finding out which pencils are needed for the pencil case
write_pencil_info: pencil information written to the file pencils.list
pencil_consistency_check: checking pencil case
pencil_consistency_check: checking requested pencils
pencil_consistency_check: performing small pencil check
[norlx51:03741] *** Process received signal ***
[norlx51:03746] *** Process received signal ***
[norlx51:03746] Signal: Segmentation fault (11)
[norlx51:03746] Signal code: Address not mapped (1)
[norlx51:03746] Failing at address: (nil)
[norlx51:03743] *** Process received signal ***
[norlx51:03743] Signal: Segmentation fault (11)
[norlx51:03743] Signal code: Address not mapped (1)
[norlx51:03743] Failing at address: (nil)
[norlx51:03747] *** Process received signal ***
[norlx51:03747] Signal: Segmentation fault (11)
[norlx51:03747] Signal code: Address not mapped (1)
[norlx51:03747] Failing at address: (nil)
[norlx51:03747] [ 0] [0xb7f6a440]
[norlx51:03747] [ 1] src/run.x(testfield_MP_testfield_after_boundary+0x493) [0x81a1779]
[norlx51:03747] [ 2] src/run.x(equ_MP_pde+0x198f) [0x85285b0]
[norlx51:03747] [ 3] src/run.x(pencil_check_MP_pencil_consistency_check+0x2d8c) [0x8533a1c]
[norlx51:03747] [ 4] src/run.x(MAIN_+0x1831) [0x853b901]
[norlx51:03747] [ 5] src/run.x(main+0x41) [0x8564431]
[norlx51:03747] [ 6] /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0) [0xb7c82450]
[norlx51:03747] [ 7] src/run.x [0x80862b1]
[norlx51:03747] *** End of error message ***
[norlx51:03741] Signal: Segmentation fault (11)
[norlx51:03741] Signal code: Address not mapped (1)
[norlx51:03741] Failing at address: (nil)
[norlx51:03743] [ 0] [0xb7f1d440]
[norlx51:03741] [ 0] [0xb7f7e440]
[norlx51:03741] [ 1] src/run.x(testfield_MP_testfield_after_boundary+0x493) [0x81a1779]
[norlx51:03741] [ 2] src/run.x(equ_MP_pde+0x198f) [0x85285b0]
[norlx51:03741] [ 3] src/run.x(pencil_check_MP_pencil_consistency_check+0x2d8c) [0x8533a1c]
[norlx51:03741] [ 4] src/run.x(MAIN_+0x1831) [0x853b901]
[norlx51:03741] [ 5] src/run.x(main+0x41) [0x8564431]
[norlx51:03741] [ 6] /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0) [0xb7c96450]
[norlx51:03741] [ 7] src/run.x [0x80862b1]
[norlx51:03741] *** End of error message ***
[norlx51:03746] [ 0] [0xb7f6a440]
[norlx51:03743] [ 1] src/run.x(testfield_MP_testfield_after_boundary+0x493) [0x81a1779]
[norlx51:03743] [ 2] src/run.x(equ_MP_pde+0x198f) [0x85285b0]
[norlx51:03743] [ 3] src/run.x(pencil_check_MP_pencil_consistency_check+0x2d8c) [0x8533a1c]
[norlx51:03743] [ 4] src/run.x(MAIN_+0x1831) [0x853b901]
[norlx51:03743] [ 5] src/run.x(main+0x41) [0x8564431]
[norlx51:03743] [ 6] /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0) [0xb7c35450]
[norlx51:03743] [ 7] src/run.x [0x80862b1]
[norlx51:03743] *** End of error message ***
[norlx51:03746] [ 1] src/run.x(testfield_MP_testfield_after_boundary+0x493) [0x81a1779]
[norlx51:03746] [ 2] src/run.x(equ_MP_pde+0x198f) [0x85285b0]
[norlx51:03746] [ 3] src/run.x(pencil_check_MP_pencil_consistency_check+0x2d8c) [0x8533a1c]
[norlx51:03746] [ 4] src/run.x(MAIN_+0x1831) [0x853b901]
[norlx51:03746] [ 5] src/run.x(main+0x41) [0x8564431]
[norlx51:03746] [ 6] /lib/tls/i686/cmov/libc.so.6(__libc_start_main+0xe0) [0xb7c82450]
[norlx51:03746] [ 7] src/run.x [0x80862b1]
[norlx51:03746] *** End of error message ***
[norlx51:03733] [0,0,0] ORTE_ERROR_LOG: Timeout in file base/pls_base_orted_cmds.c at line 275
[norlx51:03733] [0,0,0] ORTE_ERROR_LOG: Timeout in file pls_rsh_module.c at line 1166
[norlx51:03733] [0,0,0] ORTE_ERROR_LOG: Timeout in file errmgr_hnp.c at line 90
mpiexec noticed that job rank 3 with PID 3747 on node norlx51 exited on signal 11 (Segmentation fault).
[norlx51:03733] [0,0,0] ORTE_ERROR_LOG: Timeout in file base/pls_base_orted_cmds.c at line 188
[norlx51:03733] [0,0,0] ORTE_ERROR_LOG: Timeout in file pls_rsh_module.c at line 1198
--------------------------------------------------------------------------
mpiexec was unable to cleanly terminate the daemons for this job. Returned value Timeout instead of ORTE_SUCCESS.
--------------------------------------------------------------------------
Command exited with non-zero status 139
real 22.80
user 0.01
sys 0.00
env G95_MEM_INIT=NAN G95_FPU_EXCEPTIONS=Yes G95_MEM_MAXALLOC=Yes G95_FPU_ZERODIV=Yes G95_FPU_OVERFLOW=Yes G95_SHOW_LOCUS=Yes G95_FPU_INVALID=Yes /usr/bin/time -p mpiexec -mca btl ^openib -n 4 src/run.x failed: No such file or directory
Aborting
----------------------------------------------------------------------
### auto-test failed ###
Failed 4 test(s) out of 46:
/home/brandenb/pencil-weekly-tests/samples/interstellar (starting)
/home/brandenb/pencil-weekly-tests/samples/1d-tests/solar-atmosphere-temperature (running)
/home/brandenb/pencil-weekly-tests/samples/testfield_nonlin_z (running)
/home/brandenb/pencil-weekly-tests/samples/1d-tests/H2_flamespeed (starting)
CPU time (including compilation): 02:09:41u 24:54s
Total wall-clock time: 02:32:03 = 01:31:40 + 59:54
Maintainers of failed tests: nbabkovskaia/gmail:com,brandenb/nordita:dk,f:a:gent/newcastle:ac:uk,brandenb/nordita:org
Thu Sep 2 14:22:31 2010